Publications

You can also find my articles on my Google Scholar profile.

Journal Articles

Stochastic Filtering of Reaction Networks Partially Observed in Time Snapshots
Muruhan Rathinam and Mingkai Yu
Journal of Computational Physics, vol. 515, 2024, p. 113265.
DOI · arXiv

State and Parameter Estimation from Exact Partial State Observation in Stochastic Reaction Networks
Muruhan Rathinam and Mingkai Yu
The Journal of Chemical Physics, vol. 154, no. 3, 2021, p. 034103.
DOI · arXiv

Dissertation

State and Parameter Estimation in Stochastic Dynamical Systems
Mingkai Yu
Ph.D. dissertation, University of Maryland, Baltimore County, 2023. Advisor: Muruhan Rathinam.
PDF

Two problems: 1. recovering diffusivity from raw fluorescence correlation spectroscopy data (Chapter 2). 2. state and parameter estimation in partially observed chemical reaction networks, in continuous time (Chapter 3) and from discrete-time snapshots (Chapter 4).